various cleanup (CITATION file, junk test directory, old URLs, etc.)
deltamethod
: attempt to improve handling of functions
missing from derivs table when warning language is not English
lambertW
: slightly improved reporting when iteration
limits reached
documentation/CRAN-compatibility update
remove R2WinBUGS support per CRAN request
fix typo in dbetabinom help page
dmvnorm slightly more robust
update package help page
add goby data
improve curve3d documentation (potential plyr issues)
add imports for R CMD check
add labels to curve3d with wireframe plot
change rgl from Depends: to Suggests: (helps MacOS users when rgl installation is troublesome)
CRAN compatibility tweaks; add link to goby data; update link to damselfish data
CRAN compatibility tweaks
CRAN compatibility tweaks
dbetabinom fix (reported by Christian Robert)
more CRAN compatibility tweaks (versions 1.3.2 - 1.3.3)
add 'lims' argument to HPDregionplot
add plyr dependency, use_plyr option in curve3d
remove EISPACK=TRUE in dmvnorm
small fix for NAs in lambertW
tweaks to avoid NOTES in CRAN check, cleanup
asymptotic extension to lambertW (remove possibility of vectorized branch specification)
update NEWS to NEWS.Rd
minor bugfixes for HPDregionplot
tweaks to pass checks on R 2.13
add @data to calcslice
add (trivial) NAMESPACE
add contour3d
add xlim/ylim arguments to curve3d
remove adapt from install.packages()
add warning about adapt
move CITATION file
change is.na() test in lambertW to is.finite()
added ggplot2 to install.packages(), streamline
REMOVED "traceplot" code: nearly identical to xyplot.mcmc etc. in coda package
add firfec0.bug to BUGS
reverse date order of NEWS
tweak to curve3d from Robert Burns
moved ChangeLog to NEWS
added axis.scinot
argh, another tweak to get.emdbook.packages
tweaked deltavar to be slightly more general
changed "Wrasse" to "Damsel[fish]" throughout (oops)
tweaked get.emdbook.packages (do.call rather than sapply)
tweaked LambertW NA behavior (still not optimal)
ANOTHER big bug in dmvnorm (sigh): spurious factor of n before log determinant (should consider removing dmvnorm and just referring users to mvtnorm::dmvnorm)
added cross-ref to mvtnorm::dmvnorm in dmvnorm.Rd
fixed major bugs in dmvnorm
added bbmle to get.emdbook.packages
added an extended version of trcoef (transform coefficients)
added (preliminary) perturb.params
tweaked some keywords/aliases
added traditional parameterization for dbetabinom
added note about SuppDists to ?dbetabinom
removed coda dependency
put myxo1.bug into BUGS directory
tweaked dbetabinom documentation
fixed (major) bug in get.emdbook.packages
added aliases to data .Rd files
added reference to gsl package in lambertW Rd file
added gridsearch2d
added metropSB (Metropolis-Szymura-Barton)
internal tweaks
tiny doc fix for Myxo (sum instead of bsum)
removed qcredint (HPDinterval[coda] is better)
added calcslice, HPDregionplot, *chibarsq functions
fixed deltavar
tweaks to scinot()
added lump.mcmc.list()
changed dataset names, moved lily and goby data sets to emdbookx
added require(coda) to as.mcmc.bugs
added d,rbetabinom
added SeedPred_mass data (numeric vector of seed masses)
added numeric derivatives to deltavar
fixed bug in calcslice (not referring to correct function)
added Lily data (moved from emdbookx)
added r/dzinbinom (zero-inflated negative binomial) functions
lseq
scinot
added myxomatosis data
added "none" option to curve3d
added credible interval functions, as.mcmc.bugs
added more data (fir and fish survivorship)
delta-method functions
get-packages function
added Vonesh data
lambertW function (from bbmisc)