Package: R2admb 0.7.16.3

R2admb: 'ADMB' to R Interface Functions

A series of functions to call 'AD Model Builder' (i.e., compile and run models) from within R, read the results back into R as 'admb' objects, and provide standard accessors (i.e. coef(), vcov(), etc.)

Authors:Ben Bolker [aut, cre], Hans Skaug [aut], Jeff Laake [aut]

R2admb_0.7.16.3.tar.gz
R2admb_0.7.16.3.zip(r-4.7)R2admb_0.7.16.3.zip(r-4.6)R2admb_0.7.16.3.zip(r-4.5)
R2admb_0.7.16.3.tgz(r-4.6-any)R2admb_0.7.16.3.tgz(r-4.5-any)
R2admb_0.7.16.3.tar.gz(r-4.7-any)R2admb_0.7.16.3.tar.gz(r-4.6-any)
R2admb_0.7.16.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
R2admb/json (API)
NEWS

# Install 'R2admb' in R:
install.packages('R2admb', repos = c('https://bbolker.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

4.75 score 3 packages 90 scripts 781 downloads 7 mentions 19 exports 2 dependencies

Last updated from:66328f4a7f. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE109
source / vignettesOK180
linux-release-x86_64NOTE125
macos-release-arm64NOTE90
macos-oldrel-arm64NOTE74
windows-develNOTE79
windows-releaseNOTE91
windows-oldrelNOTE82
wasm-releaseOK106

Exports:admb_versionclean_admbcompile_admbdat_writedo_admbextract_gradientfind_large_cormcmc.controlread_admbread_parsread_pltread_psvread_reprun_admbrun.controlsetup_admbstdErwrite_datwrite_pin

Dependencies:codalattice

Basic examples of R2admb/AD Model Builder use

Rendered fromR2admb.Rnwusingknitr::knitron May 26 2026.

Last update: 2022-11-07
Started: 2012-12-18

Readme and manuals

Help Manual

Help pageTopics
ADMB to R interface functionsR2admb-package R2admb
Query ADMB versionadmb_version
Standard accessor functions for ADMB model fitsAIC.admb coef.admb confint.admb deviance.admb logLik.admb print.admb print.summary.admb stdEr stdEr.admb summary.admb vcov.admb
Compile ADMB files, run, read outputcompile_admb read_admb run_admb
Compile and/or run an ADMB model, collect outputdo_admb
Extract gradientsextract_gradient
Find large correlationsfind_large_cor
Control options for MCMC after ADMB fittingmcmc.control
Plot MCMC histogramplot.admb_hist
Read in parameters from an AD Model Builder runread_pars read_psv read_rep
Read in ADMB profile fileread_plt
set run options for running ADMB via Rrun.control
Set up AD Model Builder environment variablesclean_admb setup_admb
Write parameter and data files for ADMBdat_write write_dat write_pin