Package: R2admb 0.7.16.3

R2admb: 'ADMB' to R Interface Functions

A series of functions to call 'AD Model Builder' (i.e., compile and run models) from within R, read the results back into R as 'admb' objects, and provide standard accessors (i.e. coef(), vcov(), etc.)

Authors:Ben Bolker [aut, cre], Hans Skaug [aut], Jeff Laake [aut]

R2admb_0.7.16.3.tar.gz
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R2admb_0.7.16.3.tgz(r-4.4-any)R2admb_0.7.16.3.tgz(r-4.3-any)
R2admb_0.7.16.3.tar.gz(r-4.5-noble)R2admb_0.7.16.3.tar.gz(r-4.4-noble)
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R2admb.pdf |R2admb.html
R2admb/json (API)
NEWS

# Install 'R2admb' in R:
install.packages('R2admb', repos = c('https://bbolker.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

19 exports 2.22 score 2 dependencies 3 dependents 7 mentions 69 scripts 970 downloads

Last updated 2 years agofrom:66328f4a7f. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 24 2024
R-4.5-winNOTEAug 24 2024
R-4.5-linuxNOTEAug 24 2024
R-4.4-winNOTEAug 24 2024
R-4.4-macNOTEAug 24 2024
R-4.3-winOKAug 24 2024
R-4.3-macOKAug 24 2024

Exports:admb_versionclean_admbcompile_admbdat_writedo_admbextract_gradientfind_large_cormcmc.controlread_admbread_parsread_pltread_psvread_reprun_admbrun.controlsetup_admbstdErwrite_datwrite_pin

Dependencies:codalattice

Basic examples of R2admb/AD Model Builder use

Rendered fromR2admb.Rnwusingknitr::knitron Aug 24 2024.

Last update: 2022-11-07
Started: 2012-12-18

Readme and manuals

Help Manual

Help pageTopics
ADMB to R interface functionsR2admb-package R2admb
Query ADMB versionadmb_version
Standard accessor functions for ADMB model fitsAIC.admb coef.admb confint.admb deviance.admb logLik.admb print.admb print.summary.admb stdEr stdEr.admb summary.admb vcov.admb
Compile ADMB files, run, read outputcompile_admb read_admb run_admb
Compile and/or run an ADMB model, collect outputdo_admb
Extract gradientsextract_gradient
Find large correlationsfind_large_cor
Control options for MCMC after ADMB fittingmcmc.control
Plot MCMC histogramplot.admb_hist
Read in parameters from an AD Model Builder runread_pars read_psv read_rep
Read in ADMB profile fileread_plt
set run options for running ADMB via Rrun.control
Set up AD Model Builder environment variablesclean_admb setup_admb
Write parameter and data files for ADMBdat_write write_dat write_pin