Package: R2admb 0.7.16.3
R2admb: 'ADMB' to R Interface Functions
A series of functions to call 'AD Model Builder' (i.e., compile and run models) from within R, read the results back into R as 'admb' objects, and provide standard accessors (i.e. coef(), vcov(), etc.)
Authors:
R2admb_0.7.16.3.tar.gz
R2admb_0.7.16.3.zip(r-4.5)R2admb_0.7.16.3.zip(r-4.4)R2admb_0.7.16.3.zip(r-4.3)
R2admb_0.7.16.3.tgz(r-4.4-any)R2admb_0.7.16.3.tgz(r-4.3-any)
R2admb_0.7.16.3.tar.gz(r-4.5-noble)R2admb_0.7.16.3.tar.gz(r-4.4-noble)
R2admb_0.7.16.3.tgz(r-4.4-emscripten)R2admb_0.7.16.3.tgz(r-4.3-emscripten)
R2admb.pdf |R2admb.html✨
R2admb/json (API)
NEWS
| # Install 'R2admb' in R: |
| install.packages('R2admb', repos = c('https://bbolker.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:66328f4a7f. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 23 2024 |
| R-4.5-win | NOTE | Oct 23 2024 |
| R-4.5-linux | NOTE | Oct 23 2024 |
| R-4.4-win | NOTE | Oct 23 2024 |
| R-4.4-mac | NOTE | Oct 23 2024 |
| R-4.3-win | OK | Oct 23 2024 |
| R-4.3-mac | OK | Oct 23 2024 |
Exports:admb_versionclean_admbcompile_admbdat_writedo_admbextract_gradientfind_large_cormcmc.controlread_admbread_parsread_pltread_psvread_reprun_admbrun.controlsetup_admbstdErwrite_datwrite_pin
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ADMB to R interface functions | R2admb-package R2admb |
| Query ADMB version | admb_version |
| Standard accessor functions for ADMB model fits | AIC.admb coef.admb confint.admb deviance.admb logLik.admb print.admb print.summary.admb stdEr stdEr.admb summary.admb vcov.admb |
| Compile ADMB files, run, read output | compile_admb read_admb run_admb |
| Compile and/or run an ADMB model, collect output | do_admb |
| Extract gradients | extract_gradient |
| Find large correlations | find_large_cor |
| Control options for MCMC after ADMB fitting | mcmc.control |
| Plot MCMC histogram | plot.admb_hist |
| Read in parameters from an AD Model Builder run | read_pars read_psv read_rep |
| Read in ADMB profile file | read_plt |
| set run options for running ADMB via R | run.control |
| Set up AD Model Builder environment variables | clean_admb setup_admb |
| Write parameter and data files for ADMB | dat_write write_dat write_pin |
