Package: emdbook 1.3.13

emdbook: Support Functions and Data for "Ecological Models and Data"

Auxiliary functions and data sets for "Ecological Models and Data", a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0).

Authors:Ben Bolker [aut, cre], Sang Woo Park [ctb], James Vonesh [dtc], Jacqueline Wilson [dtc], Russ Schmitt [dtc], Sally Holbrook [dtc], James D. Thomson [dtc], R. Scot Duncan [dtc]

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NEWS

# Install 'emdbook' in R:
install.packages('emdbook', repos = c('https://bbolker.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bbolker/emdbook/issues

Datasets:

On CRAN:

31 exports 4 stars 4.29 score 10 dependencies 21 dependents 13 mentions 608 scripts 5.0k downloads

Last updated 2 months agofrom:3917a51286. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 06 2024
R-4.5-winNOTESep 06 2024
R-4.5-linuxNOTESep 06 2024
R-4.4-winNOTESep 06 2024
R-4.4-macNOTESep 06 2024
R-4.3-winNOTESep 06 2024
R-4.3-macNOTESep 06 2024

Exports:apply2das.mcmc.bugsaxis.scinotcalcslicecontour3dcurve3ddbetabinomdchibarsqdeltamethoddeltavardmvnormdzinbinomget.emdbook.packagesgridsearch2dHPDregionplotlambertWlambertW_baselseqlump.mcmc.listlWasympmetropSBncredintpchibarsqperturb.paramsqchibarsqrbetabinomrchibarsqrzinbinomscinottcredinttrcoef

Dependencies:bbmlebdsmatrixcodalatticeMASSMatrixmvtnormnumDerivplyrRcpp

Readme and manuals

Help Manual

Help pageTopics
Support Functions and Data for "Ecological Models and Data"emdbook-package emdbook
Apply a function to a combination of vectorsapply2d
Convert WinBUGS output to CODA formatas.mcmc.bugs
Negative log-likelihood slicecalcslice
Superimpose contour lines on a 3D plotcontour3d
Calculate Bayesian credible intervalsncredint tcredint
Plot a 3D surface representing a 2D curvecurve3d
Reef fish (damselfish) dataDamselfish DamselRecruitment DamselRecruitment_sum DamselSettlement
Beta-binomial distributionBetaBinomial dbetabinom rbetabinom
Mixed chi-squared distributionsdchibarsq pchibarsq qchibarsq rchibarsq
Delta method functionsdeltamethod deltavar
Deprecated (obsolete) functionstraceplot.mcmc
Multivariate normal distribution density functiondmvnorm
Zero-inflated negative binomial distributiondzinbinom rzinbinom
Data on fir (Abies) life historyFir FirDBHFec FirDBHFec_sum
install and update auxiliary packagesget.emdbook.packages update.bmb.packages
Goby (reef fish) survivorship dataGobySurvival
Graphical grid search in 2Dgridsearch2d
Plot highest posterior density regionHPDregionplot
Lambert W functionlambertW lambertW_base lWasymp
Glacier lily occurrence and fecundity dataLily Lily_sum
Log-spaced sequencelseq
Utility functions for mcmc objectslump.mcmc.list
Metropolis-Szymura-Barton algorithmmetropSB
Myxomatosis titer dataMyxo MyxoTiter_sum
Create a list of perturbed parametersperturb.params
Data on reed frog predation experimentsReedfrog ReedfrogFuncresp ReedfrogPred ReedfrogSizepred
Scientific notation as LaTeX/expression()axis.scinot scinot
Seed predation data set from Duncan and Duncan 2000SeedPred SeedPred_mass SeedPred_wide
Transform coefficientstrcoef